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Version: 1.3.9.3 (prod)
Date:    07/07/2022

    (i) Fixed JIRA issue tracking links

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Version: 1.3.9.2 (prod)
Date:    07/01/2022

    (i) Added 90-day data purge notification

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Version: 1.3.9.1 (prod)
Date:    03/22/2022

    Version built expressly for migration to new servers.

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Version: 1.3.9
Date:    05/10/2021
    (i) Partitioner Module
        - Is able to generate _PAR csv using the _REV file output from the Polisher Module as part of Workflow
        - In _PAR csv file generated, the naming convention for Building Block IDs now match with corresponding partition numbers
        i.e. BatchName_p001. - The 001 after _p, for each sequence will be used to maintain mapping in the output
        [NOTE: Current partitioner naming convention only supports 3 characters after '_p'. i.e. 0001 will cause unexpected behavior]

    (ii) Juggler Module
        - First and Last 3 codons of a CDS in sequences will not be modified by the Juggler Module

    (iii) Bug fix - BOOST is able to read files uploaded containing Custom Codon Table and Restriction Sites

    (iv) Bug fix - Only jobs selected for deletion are deleted on the Job List page instead of random jobs

    (v) Polisher Module
        - Sequences who violations occurred in non-modifiable regions will also be written to output files
        (These were previously not written to output files causing them to not get partitioned as well)

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Version: 1.3.8
Date:    05/04/2020

  BOOST does not modify 
  * regions of two (or more) overlapping mutable features, 
    i.e. features annotated as CDS or gene, and
  * the start codon when optimizing mutable features for synthesis

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Version: 1.3.7
Date:    02/20/2020

  (i) input of initial value in Partitioner
 (ii) bug-fix in Jobs table (select and delete)

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Version: 1.3.6
Date:    10/29/2019

  (i) updated default values for Chewback/Gibson assembly
      BB length 350/1700
      Overlap 25/30/40 
      Primers 23/40/62
 (ii) bug-fix in logging mechanism on back-end
 
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Version: 1.3.5
Date:    10/23/2019

  (i) bug-fixes in invocation of vendor APIs

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Version: 1.3.4
Date:    03/07/2019

  (i) bug-fixes in Partitioner

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Version: 1.3.3
Date:    02/21/2019

  (i) various bug-fixes in Partitioner
 (ii) warnings in case of degenerate sequence input
(iii) error messages in case of processing degenerate sequences

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Version: 1.3.2
Date:    02/12/2019

 (i) Sequence patterns in Polisher app:
     - support of Ns in degenerated sequences
     - output of the sequence pattern in case of violations 
(ii) Various bug fixes in Partitioner app, such as keeping the features of the input sequences 
     in the GenBank output  
 
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Version: 1.3.1
Date:    01/19/2019

 (i) Update calls to API of Twist for clonal products up to 5kb
     
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Version: 1.3.0
Date:    12/11/2018

 (i) Integration of GenScript (https://www.genscript.com/) as 
     DNA synthesis vendor in Polisher and Workflow-Manager apps 

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Version: 1.2.0
Date:    10/12/2018

 (i) Check for sequence duplicates (ID and nucleotides 
     of sequences) and display of warnings in case of duplicates 

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Version: 1.1.1
Date:    10/10/2018

 (i) Bug-fix in provenance tracking of reverse-translation tasks

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Version: 1.1.0
Date:    08/15/2018

 (i) Bug-fixes
(ii) Addition of "Codon Usage Tables Merger" App 

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Version: 1.0.4
Date:    05/22/2018

 (i) Bug-fixes regarding Twist API integration
(ii) Storing request data and results for each job in JSON format. 

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Version: 1.0.3
Date:    05/07/2018

 (i) Integration of new version of Twist API
(ii) Initial version of "Builder" app

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Version: 1.0.2
Date:    11/01/2017

(i) Web UI:
    -- removed "Forum"
    -- added "Account" for displaying user information
    
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Version: 1.0.1
Date:    09/30/2017


(i) Partitioner:
** Inputs:
   -- vector name, resistance marker, and origin of replication
   -- vector linearization method and corresponding parameter values
      - digestion using a restriction enzyme
      - amplification using 5' and 3' primers
** Outputs:
   -- Tree-View and Tabular-View of input sequences, their building blocks, 
      and their 5' and 3' primers, as well as Download of a CSV file containing 
      this information    
   -- design.xml avoiding duplicate primer sequences
   -- build.sbol, which is JGI's new version of design.xml

The new Partitioner inputs are also available in the Workflow Manager qpp.

(ii) Manuals:
** updated description of Partitioner inputs 
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